Checking account Included in bk

[KKAB]

Okay, so I called the bank that took a payment out of my checking account after I'd filed. They said they would put the money back into my account, but that the account would be included in bankruptcy because it was negative at the time of filing. After the money they put back in is credited to my account can I still withdraw it if it's included in my bk? Also, the account was $-109 and they used my automatic deposit to pay those fees as well. Shouldn't that be refunded (or am I asking for too much now?)?